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ARs were excluded if the pairwise alignment contained less than 50% of aligned nucleotides.
Pairwise alignment of LRR1Ri and XA21.
A pairwise alignment of LRR1Ri and XA21 was performed.
b Pairwise alignment of OsOXO4 sequences from Moroberekan and Vandana.
In this paper we present the proposed solutions in two main parts: pairwise alignment (Section "Pairwise alignment technique'') and multi-view alignment (Section "Multi-view alignment pipeline").
To verify correct alignments we use the same criteria stated in Section "Pairwise alignment results''.
Table 2 Experimental results summary Pairwise alignment Multi-view alignment Dataset Number of RI pairs Avg.
Analysis of the relationship between the different members is based on pairwise alignment, compilation, and comparison of their SET-domains.
MSAs require more sophisticated methodologies than pairwise alignment because they are more computationally complex.
The rapidly evolving ITS rDNA region spanning across ITS1 rDNA and ITS2 rDNA sequences differed by 34% (375 pairwise alignment length) and 37% (314 pairwise alignment length), respectively.
Pairwise alignment scores of Vsp dome region sequences were obtained using ClustalW (Version 7.6.0.87).
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