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For CLR, whenever there were no more than four peaks over threshold and the victim's alleles were included in those peaks, the computer filtered the candidate list using the victim reference genotype; otherwise, the initial "all allele pairs" list was used.
The most correlated pairs list was transformed to gene lists by adding the two members of all pairs less the overlap set of genes between the members.
When we compared the SAS pairs from the cell lines and patient biopsies we found that 7 were in common, therefore ~87% of the clinical SAS pairs were also contained within the cell line SAS pairs list.
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For the experimentally validated data, we tested the correlations of the paired expression profiles using miRNA-target pairs listed in TarBase (Additional file 4).
Third, we took into account all possible base pairs listed in Eq. (2).
DNA was purified, and each fragment was PCR-amplified using the primer pairs listed in Supplementary information, Table S1.
cDNAs were subjected to conventional PCR or qPCR with SYBR green dye on a LightCycler 480 machine (Roche) using the primer pairs listed in Supplementary Table S8.
40623_2016_563_MOESM1_ESM.pdf Additional file 1. Interferograms obtained from InSAR pairs listed in Table 1.
The oligonucleotide primer pairs listed in Table 1 were designed using Primer3 (http://primer3.sourceforge.net/).net/
Indicated promoter regions were amplified from the chromosomal DNA of S. antibioticus using primer pairs listed in Table 2.
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CEO of Professional Science Editing for Scientists @ prosciediting.com