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A new particle pairing strategy is presented for the Direct Simulation Monte Carlo (DSMC) method.
Next, this theory is extended to the case of using the Nearest Neighbour pairing strategy.
Three classes of pairing strategy were considered for a range of subunit concentrations.
Qrr3 forms different base-pairing interactions with each mRNA target, and the particular pairing strategy determines which regulatory mechanism occurs.
Plane Couette flow simulations are used to demonstrate the success of the new particle pairing strategy in becoming independent of the cell size.
These properties of the systems, which did not require pre-existing replicators, templates or functional catalysts, were shown to be sensitive to the form of pairing strategy, subunit concentrations and various conditions that could theoretically be altered by products of the systems.
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In fact, there are other alternative pairing strategies, for instance greedy or long-long pairing [21].
Both pairing strategies use the Euclidean distances between each feature's mean and the origin.
Therefore, in [21], two pairing strategies, the long-long and the long-short pairing, were proposed for the magnitude and the phase, respectively.
The search terms and pairing strategies used to identify the initial pool of literature are summarized in Table 1.
Unlike eukaryotic ∼22 nt unstructured microRNAs, which always use 5′ seed regions for base pairing, bacterial trans-encoded sRNAs have a variety of lengths and secondary structures and they use complicated non-contiguous base pairing strategies (Bartel, 2009).
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