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But suppose that almost all lawyers agree on the relevance of one of a pair of inconsistent candidates.
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Based on Figure 3 a threshold of 0.2 was chosen for the difference in pedigree-based and genomic relationships to declare a pair of sibs inconsistent.
Detection of inconsistent pairs of sibs was either based on differences between pedigree and genomic relationships (SIBREL), or on the number of opposing homozygous genotypes (SIBCOUNT) between them.
After identification of inconsistent pairs in step one of methods SIBCOUNT and SIBREL, the removal of animals from the dataset in the subsequent steps was the same for both methods.
In each iteration, the animal contributing the highest number of inconsistent sib pairs was assumed to have a real mismatch between pedigree and SNP genotypes and was therefore removed.
Both methods were preceded either by the deletion of inconsistent parent-offspring pairs (by PAR-OFF) or not.
Values of consistency ratio exceeding 0.10 are indicative of inconsistent judgments; whereas values of 0.10 or less indicate reasonable level of consistency in the pair-wise comparison.
This mean Robertson-Foulds score can be interpreted as an average of just over one inconsistent edge between each pair of trees.
See Removal of Inconsistent Provisions note below.
The proportion of inconsistent valuations was larger in the Netherlands study (10.7 %) than in the England study (8.3 %), although the association between setting and the propensity to give a pair of logically inconsistent values is not statistically significant at the 5%% level.
Removal of inconsistent annotations.
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