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We found that PSIKO, sNMF, and ADMIXTURE all correctly infer the widely accepted number of three founders for that dataset, and that the RMSE between any pair of estimated Q-matrices is never >0.02 (i.e., a 2% disagreement), suggesting that all tested methods yield very similar results (data not shown).
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These are manifested by high relative errors of the reconstructed parameter values, spread uniform-like distributions of some parameter estimates, and strong correlations between some pairs of estimated parameters.
The differences between seasons, districts, and altitude classes for the genetic diversity estimates (n a, n e, He and R S ) were tested using the Wilcoxon signed-ranks non-parametric test for two groups, arranged for paired observations (i.e. one pair of estimates for each locus) [ 60].
We considered a pair of an estimated parameter and GT correctly matched if the metric distance between the estimated head position and the GT position is less than five pixels.
Given our previous results regarding the use of shared neighborhoods of WGD pairs to estimate the rate of divergence, we here use the neighborhoods of WGD pairs as proxies of their functional fates.
For each pair of estimates, the upper part is the estimated elasticity, and the lower part the estimated standard error.
When there is any inconsistency between a pair of estimates, derived from the change in the cost of a node, the algorithm must update the estimates of every node affected by this change.
Similar to the approach of Vul and Pashler [2], we measured the degree of independence between a pair of estimates by computing how much of an accuracy improvement was afforded by averaging the responses, versus considering them separately.
Waples and Do (2010) noted that studies using the temporal method to estimate N e could also include a pair of estimates from the LD method.
For present purposes, I ran the MCMC for 1000 steps (with α = 100) and used the pair of estimates with the maximum likelihood as the MLE.
That said, Sotheby's is the only house to offer a Vincent Van Gogh, a still life of a pair of shoes estimated at $8 million to $12 million.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com