Sentence examples for packages to estimate from inspiring English sources

Instead, we calculated the sum of packages to estimate severity of asthma.

We used the DESeq and edgeR packages to estimate the dispersion parameter [ 13, 14] (Additional file 5).

We used the DESeq and edgeR packages to estimate gene expression differences using a generalized linear model, and SAS to calculate the ANOVA parameters.

We used the 'HYPHY' package to estimate the topology of phylogenetic tree using the maximum likelihood method [34].

We used the codeml program in the PAML v.3.14 [18] package to estimate the non-synonymous divergence (dN), synonymous divergence (dS), and their ratio (dN/dS) in model 0, that allows for a single dN/dS value throughout the whole phylogenetic tree.

We used the Multipoint Engine for Rapid Likelihood Inference (MERLIN) (Abecasis et al. 2002) package to estimate heritability.

Therefore, we selected locfit package to estimate variance-mean relationship and carry out variance correction procedure at estimated true signal level in the current XBSeq implementation.

Correction for multiple testing was performed using the q-value function in the Bioconductor R package to estimate false discovery rates (FDRs) [ 37].

I have developed an open-source software package to estimate multifractals using a box-counting algorithm (available from https://github.com/lsaravia/mfsba and permanently available at doi: 10.5281/zenodo.8481).

BAM files generated by TopHat were uploaded onto Cuffdiff (component of the Cufflinks package) to estimate differential expression between samples (grouped by experimental condition) at the transcript level.

We used the R EMMA package to estimate the variance matrix V = var (y ) = K ± σ g ± 2 + I σ e 2 (Kang et al., 2008 ).