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It is now possible, using readily available computer packages, to calculate the energies and properties of many small molecules to an accuracy that can rival that obtained experimentally.
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In addition, Rcpi (the protein and small molecule descriptor calculation package for R [15]) is the only R package to calculate small molecular descriptors and protein descriptors.
We used the PERPLE_X computer software package to calculate P T pseudosections.
These loads are then used within a finite element package to calculate strain spectra within the frame.
Previously simulated photogeneration profiles are incorporated into the Device software package to calculate the I-V characteristics of considered devices.
Time-dependent DFT [47] was invoked within this package to calculate UV absorption spectra of C60 and He2@C60.
Computer program was developed which utilizes arbitrary numerical precision software package to calculate the statistics of large libraries.
We used the PSCMP/PSGRN software package to calculate the coseismic Coulomb stress changes resulting from the Jiuzhaigou earthquake (Wang et al. 2006).
Convergence to a stable posterior sample of values was assessed by visually inspecting the traceplot of simulated values and with the R coda package to calculate the Brooks-Gellman-Rubin statistic, which compares within chain variation to across chain variation (Plummer et al. [2012]).
We used the Limma program in the R-based Bioconductor package to calculate the level of differential expression [49].
We used the Limma program in the R-based Bioconductor package to calculate the level of gene differential expression for each comparison [37].
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