Sentence examples for packages for prediction from inspiring English sources

Here we present an algorithm which reprocesses Agilent DNA copy number signatures into a format that parallels the microarray signatures used in standard software packages for prediction and classification based on microarrays.

CRSD has a package for prediction of miRNA binding sites by searching the UTRs for segments of perfect Watson-Crick in the 3'UTR of the target gene set [ 16].The miRNA binding sites for each of the micro RNA are calculated in the EC-restricted set and the background set (54,576 genes from human unigenes).

The difficulties in bridging the gap between packages for CNV prediction, association analysis and visualization for distinguishing genuine signals from false positive/negative predictions in generally noisy datasets have hindered many scientists from conducting genome-wide CNV analysis of their existing large GWAS datasets.

Though a large number of software packages for indel prediction from NGS data have been developed, application of these methods to identical data sets reveals little overlap [ 5].

In independent trials, one of the leading software packages for epitope prediction is NetMHCpan/NetMHCIIpan [ 41, 42] (for class I and II HLA alleles), which is available as a web-server and an open-source download.

For each of these linker combinations, AFLP was performed using nine N/C AFLP primer combinations, which were selected using KT2440 genome sequence as reference and software package REcomb (Keygene) for prediction analysis.

First we used Kaikogaas [ 43], an automated annotation package for gene prediction [ 44], to identify possible genes.

They developed the MetWAMer package for TIS prediction and demonstrated that the proposed model based on perceptron is suitable for the TIS identification task.

Recently, another group (Stewart et al., 2009) has published DIYA, a software package for gene prediction and annotation in bacterial genomes with a modularized, open source microbial genome processing pipeline.

In the following examples we demonstrate the use of the Interpol package for the prediction of the coreceptor usage of HIV-1 according to Dybowski et al. [ 7] based on sequences of the V3-region of the HIV-1 protein gp120.

A check for $75,000 buys a ­license for the complete package of prediction and control software—a small fraction of what an outside consultant might cost.