Sentence examples for packages for building from inspiring English sources

Both of the major software packages for building and using profile HMMs explicitly focus on protein family modeling, though they retain some support for DNA.

A computer-aided design package for building synthetic life means you can create organism and see if they work.

The Data Center Helper Suite DaCHS is an integrated publication package for building VO and Web services, supporting the entire workflow from ingestion to data mapping to service definition.

Here we present CellNOptR, an open-source R software package for building predictive logic models of signaling networks by training networks derived from prior knowledge to signaling (typically phosphoproteomic) data.

Sequence Alignment and Modeling Software System SAMM) [ 40] was used to generate MSA, and HMMER package was used for building profile HMM for each MSA.

CellNOptR is an open-source software package that provides methods for building predictive logic models from signalling networks using experimental measurements.

MSMBuilder is a software package for building statistical models of high-dimensional time-series data.

All analyses were performed in R [ 55], using an option of the package GenABEL [ 56] for computing the test-statistics according to the EIGENSTRAT method, and the package kinship [ 57] for building the pedigree kinship matrix.

Two programs of the SAM package were used: buildmodel for building the profile HMMs and hmmscore (with -sw 2 and- calibrate 1 options) for searching similar protein sequences from the genomes.

The commercially available software package FemLab is evaluated as solver for building physics problems based on partial differential equations (PDEs).

The matrices package contains the objects responsible for building the pseudograph-theoretic electronic-density matrix and the edge-adjacency matrix corresponding to atom- and bond-based representations, respectively.