Sentence examples for packages and pathways from inspiring English sources

The questionnaire was designed by Coventry and Warwickshire Partnership NHS Trust based upon the Care Packages and Pathways Model devised by South West Yorkshire Mental Health Trust.

Pathway analysis also has limitations: i) although the intersections of hits among the 3 software packages IPA, MetaCore, and Pathway Studio were greater than the intersections among siRNA screens (Fig. 1B), a significant number of hits were unique to each software package; ii) as indicated above, the pathway analysis hits showed little intersection with siRNA screening hits.

Ingenuity Pathway Analysis (Ingenuity System), a genome-wide biological pathway analysis package, was used to find significantly molecular networks and pathways associated with kidney cancer.

We analyzed interactive networks and pathways using the commercial system biology oriented package Ingenuity Pathways Analysis (IPA 4.0) (http://www.ingenuity.com/).com/

The differentially expressed genes were selected using a linear model approach and implemented in the Linear Models for Microarray Bioconductor package and Ingenuity's Pathway Analysis (IPA) software.

Pathway analysis of the differentially expressed RT-PCR-validated genes (Fig.  2) in ERG- and ERG+ LNCap cells was performed using the commercial systems biology oriented package, Ingenuity Pathways Analysis (www.ingenuity.com).com

Functional analysis of interacting proteins was determined by using a commercial System Biology package, Ingenuity Pathways Analysis (IPA 8.0) (www.ingenuity.com) following the application directed protocols.

GO and pathway information were obtained from R/bioconductor packages mogene10sttranscriptcluster.db.

Pathway analysis was done using the SPIA package for R 49, which allows testing both, the pathway enrichment and pathway perturbation.

Pathprints were calculated for each sample using the Pathprint package in R. Pathways shared by leukemic and normal stem cells that are differentially expressed in progenitor cells were identified for the human and mouse datasets.

The definition also applies to the major pathway analysis software packages, of which we compared 3: Ingenuity Pathway Analysis (IPA; Ingenuity Systems); MetaCore (Thomson Reuters GeneGo); and Pathway Studio (Elsevier/Ariadne Genomics).