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Using the DNAcopy package, we observed that 5 patients lost copies of the PLA2G6 gene (22q region).
Specifically, ROIs were localized on cortical regions where, upon visual inspection using the mne_analyze function in the MNE software package, we observed the greatest activation throughout the recording epoch.
By using the yn00 program implemented in the PAML package, we observed that drug-target orthologs with a nuclear localization were the most conserved in primates, whereas those with an extracellular localization were the least conserved (fig. 7, supplementary fig. S1 and table S3, Supplementary Material online).
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Using the software package EdgeR, we observed significant changes (FDR <0.05) in antisense transcript levels for 357 of the 1247 genes with NATs in at least 1 of the 6 non-redundant time point pair comparisons.
Almost linear scaling up to 32 nodes for pair-ended reads has been reported with the Pmap package, which we observed to perform poorly for datasets larger than 20 Gb.
Utilising the R/eqtl package in both crosses, we observed a 52.3% difference in the number of significant eQTLs between sets, with the Bur-0 × Col-0 cross being the one with the highest count.
Comparing our findings for ependymoma with another study [ 42] that used the same array design as [ 13] and only the DNAcopy package to perform their analysis, we observed that some CNVs were identified exclusively by our approach.
Although no protective atmosphere was used for re-packaging of the treated meat, we observed bacterial counts that are acceptable by current regulations in the European Union (Regulation (EC) No 2073/2005).
For all Apobec proteins analyzed, we observed similar packaging efficacy between the XMRVgag pseudotyped virions and XMRV replication competent virion particles (Figure 1A and Figure 1B, left panel).
When using this driver to knock down sie RNA expression, we observed neither packaging defects nor irregular numbers of germ cells (data not shown).
For Android (see Fig. 9 and Table 21, column "Coverage/Debug-corrective"), we observed that 24 packages (out of 66) are completely covered, compared to nine packages in RQ #1.
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