With the RmiR-package, we identified 611, 715, 575, and 1,863 mRNA targets for the set of selected miRNAs, respectively, which were analyzed by using Ingenuity Pathway Analysis.
When we used the CGHcall package, we also identified two patients with extra copies of the CTNND2 gene, which encodes a protein that promotes the disruption of the adhesion protein E-cadherin, favoring cell migration and therefore cancer metastasis [ 25].
With the function implemented in RBGL package (Brandes, 2001), we identified the most important nodes (Fig. 1) judged by relative betweenness centrality that are TP53 (tumor protein p53), GRB2 (growth factor receptor-bound protein 2) and EGFR (epidermal growth factor receptor).
The lme and glmmML functions were from the nlme and glmmML packages in R. We identified 2064 patients with diabetes from 58857 EMR.
Using the local BLAST package from NCBI [ 42], we identified 9 contigs with high sequence coverage as elements of the cp genome.
Using the edgeR package (Robinson et al., 2010), we identified significant changes in RNA abundances between control and Rfx2 knockdowns, requiring greater than twofold abundance changes and a false discovery rate (FDR) less than 5%.
In our analysis, we clustered paralogs using the blastclust tool (–S 50 and –L 0.7) in BLAST package and identified 3407 gene families and 15 169 single genes.
On X-ray, the package is identified: lost luggage.
The person who sent the package, who identified herself as a woman, included a message that mentioned the hearings.
