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To identify differentially variable CpGs (DVCs) between RA and OA, where the samples in one group showed relatively consistent methylation levels but in the other group had variable methylation levels, Levene's test in the missMethyl package was performed with FDR < 0.05.
To determine the validity of the two subscales of W-GCTA that is, inference making and deduction, a confirmatory factor analysis (CFA) utilizing the LISREL 8.50 statistical package was performed.
A non-parametric test (Wilcox rank sum test, wilcox.test command, R package) was performed to examine whether there was a difference between the two distributions, and a cutoff was chosen accordingly.
A derivative of a one sample test of location as implemented in the LIMMA package was performed on the resulting enrichment scores to identify pathways that were consistently up or down regulated in each tissue type and across all tissue types [30].
The test package was performed at different times of day.
The execution of the baySeq package was performed using data after scaling for RPM mapped reads.
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As an example, identification of the heat convection constants of a typical microelectronic package are performed using the present method and the performance is examined comparing with other inverse identification methods.
After data collection, correlation analysis, regression and path analysis (using the PATH software package) were performed.
Simulations using the Coulomb 9.0 software package were performed in order to determine the expected signal shapes depending on the particle parameters (entry location and incident angles).
Second, the effect of package dimensions (the heat spreader thickness, the structural adhesive thickness and the substrate thickness) on the maximum residual stress as well as the warpage of the package is performed.
Theoretical calculations using Gaussian program package were performed for ground and excited states in both of the isolated gaseous state as well as in solution including the solvent effect using a self-consistent reaction field polarizable continuum model (PCM).
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