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We use Simprocess, a computer simulation software package, to construct hierarchically standardized models of MSS bridge engineering operations (MSSBEO), which encompass bridge superstructure and substructure production, procurement, storage and transmission of raw materials, and utilization of nonconsumable resources such as machines, tools and human resources.
We used the CRI-MAP software package to construct linkage maps [ 6].
We use the MCMCglmm package to construct Bayesian HPD credible intervals.
Specifically, we employed the 'parmigene' package (PARallel Mutual Information estimation for GEne NEtwork reconstruction, an R package) to construct eight Additional experimental networks [ 21– 25].
The aligned sequences were manually inspected and then imported into the Mega package to construct neighbor joining and parsimony trees with 1000 bootstrap replicates [ 44].
To build a whole-genome map, raw DNA molecules longer than 100 kb were used in Assembler utility of IrysView package to construct consensus genome maps of large yellow croaker.
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We use the implementation of the C4.5 algorithm [ 21] in the R software package(RWEKA) to construct the tree committee.
We used R package HardyWeinberg to construct the plot [ 28].
We used the SAS statistical package (V9.2) to construct complex variables from the extracted data.
We used MEGA 4.1 package 14 to construct the phylogeny tree with corresponding divergence times under uniform transition rate 1 (see Figure 7).
We used the R packages "WGCNA" to construct two DCNs under different conditions.
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