Sentence examples for package matrix from inspiring English sources

Data analysis was done using the biolynx package V4.0 (Micromass), and database searches were performed with the Mascot package (Matrix Science, London, UK).

The proteins were identified using the Mascot software package (Matrix Science, London, UK).

35 Data analysis was done using the biolynx package (Micromass, Manchester, England) and database searches were performed with Mascot package (Matrix Science, London, England).

Since matrices G c were often found to be singular, we used the algorithm of Higham [ 30] implemented in the function nearPD of the R-package Matrix [ 31], to approximate the nearest positive definite matrices.

Distance analysis of protostome cytoplasmic IF sequences was carried out using the Protdist and Neighbor programs of the Phylip package (JTT matrix, 100 bootstrap replicates) available at the Pasteur Institute web server (http://mobyle.pasteur.fr/cgi-bin/portal.py).py

Three bioinformatic suites were used to analyze the data obtained from the LC-MS/MS process: Proteinlynx Global Server v2.3 (PLGS, Waters, Milford, MA), Mascot (which includes Mascot Distiller, Mascot Deamon, and Mascot Server, a bioinformatics software package from Matrix Science (Matrix Science Inc., Boston, MA)) and Peaks Studio v 4.5 (BSI Bioinformatics Solutions Inc., Waterloo, Ontario).

The three packages handle matrix computation in different ways.

The arrayMvout package includes matrices of quality measures for the Affymetrix and Illumina MAQC contributions, which can support exploration of this reference-based testing concept.

Using the program Migrate [ 74], incorporated in the SNAP Workbench program package, migration matrices were constructed for each locus, indicating the number of migrants exchanged between populations.

Most open-source and commercial software packages for sparse matrix manipulation have a single-threaded implementation for SpMM, for example, Matlab3, Eigen4, and Armadillo5 (the same is also true for SpMV, sparse matrix vector multiplication).

It is interesting to note that the embedded PTFE particles were still stable even when heat treated at 450 °C, probably owing to the Ni P metal matrix package effect.