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For example, the command, SPStrGen.pl --ChainAbbrevMode Arbitrary "SM(d30:4(4E,8E,12E,16E)/34:4(5Z,8Z,11Z,14Z)(16OH[R]))", parses the arbitrary specifications for the long chain base and N-acyl chain not present in the pre-defined lists available in the package, generates the appropriate sphingomyelin structure and writes it out to a SD file.
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As the DNemulator package generates read names that include the position from which the read originates, reads in a pair do not have identical names, which RetroSeq and Jitterbug both rely on.
GeneticNetworks is a software package that generates the rate equations for the concentrations of genes and proteins in a regulatory network, [9].
This package generates many statistics about the accuracy of an assembly compared to a reference.
BANs were constructed with the aid of Pathway Architect software v3.0 (Stratagene-Agilent). Briefly, this software package generates interaction networks starting with the genes in a given list (entities) taking into account the information present in a database of known molecular interactions.
In addition, this package automatically generates the R scripts for the plots.
CIS combined the motion data with the Massive software package to generate the interactions of the digital pedestrians.
Billings and Lyons then converted their existing code to work on the Apple II and used a graphics software package to generate the game's map.
By default, the programs of the ViennaRNA Package generate an output that is meant to be easily parsable while keeping it human-readable.
The qbasePLUS package generated a calibrated normalized relative quantity (CNRQ) of gene expression for each of the analysed samples.
Figure 11 presents the packages generated by the students.
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