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For example, the command, SPStrGen.pl --ChainAbbrevMode Arbitrary "SM(d30:4(4E,8E,12E,16E)/34:4(5Z,8Z,11Z,14Z)(16OH[R]))", parses the arbitrary specifications for the long chain base and N-acyl chain not present in the pre-defined lists available in the package, generates the appropriate sphingomyelin structure and writes it out to a SD file.
This package generates many statistics about the accuracy of an assembly compared to a reference.
As the DNemulator package generates read names that include the position from which the read originates, reads in a pair do not have identical names, which RetroSeq and Jitterbug both rely on.
BANs were constructed with the aid of Pathway Architect software v3.0 (Stratagene-Agilent). Briefly, this software package generates interaction networks starting with the genes in a given list (entities) taking into account the information present in a database of known molecular interactions.
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The qbasePLUS package generated a calibrated normalized relative quantity (CNRQ) of gene expression for each of the analysed samples.
By default, the programs of the ViennaRNA Package generate an output that is meant to be easily parsable while keeping it human-readable.
2D image analysis was performed by iterative alignment and classification of the particle images using the refine2d.py function in the EMAN software package, generating between 100 200 classes for each complex (Ludtke et al., 1999).
In reality, she notes, shipping isn't "free" – it requires packaging, generates carbon emissions and may create waste – and a sustainable economy would account for those costs.
Meanwhile, plastic packaging generates $26 to $39 billion a year in profits, the report found, meaning the industry earns less than the costs everyone bears from improperly disposing of the plastic that surrounds toys, food, medicines, and other products.
Expedia executives declined to say how much more profit such packages generate than bookings for flights or hotel rooms separately.
Figure 11 presents the packages generated by the students.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com