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RankProd package analyses gene expression microarray data specifically to identify differentially expressed genes.
To achieve this, we used the 'ace' function, provided as part of the 'ape' package (Analyses of Phylogenetics and Evolution) for R (Paradis et al. 2004).
Because the phylogenetic inertia can potentially confound comparative analyses across a group of species (Fisher and Owens 2004), we performed a phylogenetically independent contrast (PIC) analysis implemented in the package Analyses of Phylogenetics and Evolution (Paradis et al. 2004).
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The Shapiro-Wilk's test was used to test for normality of the data with the statistical software package Analyse-it® (Analyse-it Software, Leeds Leeds, UK).
Statistical analysis was performed with a computer software package (Analyse-it, version 1.63, Analyse-it-software, Leeds, UK).
All the analyses were done using Excel XP version (Microsoft Corp., Redmond WA) with the statistical add-in software package Analyse-it release 1.7 (Analyse-it Software, Leeds UK).
Worse still, when these events unfolded, the world media could not comprehend them, preferring at times to reiterate ready-made claims and packaged analyses that were seriously lacking in depth and expertise.
While SAM is freely available as an Excel plug-in and as an R-package, analyses are often limited for large datasets due to very high memory requirements.
The rate of LCA studies as a whole also shifts, from a slower, steadier accumulation relying mostly on additional waste and packaging analyses up to the early-mid 2000s, into a rapid explosion of papers dominated by GHG comparisons.
Paradis, E. et al. Package 'ape': Analyses of Phylogenetics and Evolution.
When protein is determined in this way, the general factor - 17 kJ (4 kcal/g) should be applied, unless the complete package of analyses specified by Merrill and Watt (1973) are used, in which case the specific factor is preferable.
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