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Interestingly, FBXL10 shows a largely overlapping occupancy of binding sites when compared to FBXL11 [ 91- 93] and, in addition, defines a CGI subset through binding to Polycomb repressive complex 1 (PRC1), which mediates histone 2A (H2A K119) ubiquitylation through the RING1B component of this noncanonical PRC1 complex.
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This suggests that the Htz1 occupancy overlaps with the nucleosome occupancy.
The Htz1 occupancy overlaps with the nucleosome occupancy, suggesting that most of Htz1 located in the chromatin.
By integrating these ChIP-seq data for SMAD1 occupancy [ 38] into our analyses, we found that SMAD1 occupancy overlaps extensively with not only GATA1 but also TAL1 occupancy.
A clear peak can be observed (fig. 6 B) in the averaged nucleosome occupancy directly overlapping with the center and surrounding regions of the CNSs indicating a possibility of nucleosome positioning in the CNS regions.
The occupancy strructure of species in the low-mid to middle disturbance classes also overlapped, but species occupancy was generally higher and more even across species.
Niche models suggest significant overlap and occupancy of a wide range of environmental conditions among two geographically and phylogenetically distant Carychium clades (Europe and America).
The enrichment of peaks in each of these major genomic contexts was calculated and the significance of enrichment was tested based on overlap (nucleotide occupancy) using permutation analyses.
Promoter occupancy by Klf5 was assigned as overlapping with Klf4, as shown (Jiang et al., 2008).
We expect that the true TAL1 DPs should be highly overlapping with the features relevant to TAL1 differential occupancy, but not so with the irrelevant features.
Hoxa2 occupancy largely overlaps with Meis binding in the branchial arches, indicating that Meis creates an accessible platform that is recognized by Hoxa2.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com