Studies that utilize VTM [24 27] assume that the feature matrix in the training set can be completely decomposed into view and subject independent submatrices without overlapping elements.
The Table shows the number of elements in the positive and negative sets, the number of candidates overlapping elements of the positive set and the total number of extracted candidates for each dataset.
They are characterized by fragmentations, distortions, sometimes overlapped elements in different scales, simplifications, addition or omission of details in order to select the information deemed fundamental and to lighten the cognitive load that otherwise people would not be able to endure (Thorndyke and Hayes-Roth 1981; Hochmair and Frank 2000).
Furthermore, the way in which the algorithm works does not allow overlapped elements among biclusters, which is one of the most important differences between clustering and biclustering methodologies.
Additionally, regions where three or more heterozygous variant calls were made within 10 kb of each other, and where the variants also overlapped elements annotated as segmental duplications or annotated repeats, were excluded.
Crosstalk between GR and these transcription factors may occur either through composite response element, overlapping response element, or interaction between GR and transcription factors.
Cyclosporine effective element overlaps the element and confers cyclosporine sensitivity to the cyclin D1 promoter (Schneider et al. 2002).
The methylation level of a CGI, promoter, gene-body, and repeat element was estimated by means of MES overlapping each element.
We calculated the average rate for each element as the sum of the rates of each 10 kb window overlapping the element, with the rate of each window weighted by the fraction of the element overlapped by the window.
Here, we describe a function for LXRalpha as a cAMP-responsive regulator of renin and c-myc gene transcriptions by the interaction with a specific cis-acting DNA element, CNRE (an overlapping cAMP response element and a negative response element).
