Sentence examples for overlapping alignments from inspiring English sources

Aligned reads are grouped together and groups of overlapping alignments are defined as transcriptional units (TUs).

To approximate scoring that favors overlapping alignments, Stitch uses thresholds for minimum percent of total possible aligned length, the percent aligned threshold (PAT).

Overlapping alignments were condensed to distinct genomic intervals and read counts were aggregated for each interval.

Notably, rps-BLAST returns overlapping alignments for 5 different PSSMs defined as Serpentine type 7TM domains as characterizing the domain architecture of 1F88.

In contrast, the overlapping alignments returned by Adaptive GDDA-BLAST depict the domain architecture of 1N11 with all 12 Ankyrin-repeat domains predicted (pink line in Figure 4-b).

The positional scores were quantified in the following manner: For each positive PSSM, the alignment boundaries were determined by the overlapping alignments obtained from either Adaptive GDDA-BLAST or rps-BLAST.

Overlapping alignment threshold was arbitrary set at 7 nt.

For overlapping alignment regions, we formed single contiguous regions.

Insertion deletion polymorphisms and polymorphic sites overlapping alignment gaps were excluded from the analysis.

Trimmed pair-end reads were joined together through overlapping alignment with a modified Needleman-Wunsch algorithm.

Multiply hit sites were included in all analyses but insertion-deletion polymorphisms and polymorphic sites overlapping alignment gaps were excluded.