Sentence examples for overlap of read from inspiring English sources

Importantly, this feature allows complete overlap of read pairs following paired-end sequencing to facilitate stringent downstream filtering of sequencing errors.

The reasoning behind this approach is that various reads will map back to various positions across the genome, and exhibit significant overlap of read mapping.

We also present htseq-count, a tool developed with HTSeq that preprocesses RNA-Seq data for differential expression analysis by counting the overlap of reads with genes.

This is obviously understood because when the number of shared l-mers between reads is set to be larger, the probability of identified correct overlap of reads is higher.

The obtained clean reads of all six samples were assembled using the Trinity program [ 32] with the following parameters: k-mer = 25; minimum k-mer coverage = 2; maximum length expected between fragment pairs = 500; minimum overlap of reads with growing transcript PE = 75; maximum number of reads to anchor within a single graph = 200,000.

The feature leads to a fact that most of q-mer repeats in a metagenomic dataset are caused by overlaps of reads.

The main difference between the two frameworks is how we arrive at a string graph: through detecting long overlaps of reads (overlap layout consensus) or through construction of de Bruijn graphs based on k-mers.

The algorithm uses a suffix tree to detect and correct substitution and indel errors following Shrec and HybridShrec, but with enhanced overlap detection of reads with indel errors using edit distance comparisons.

Enhanced DRAM EDRAM is a high-speed DRAM chip developed by Ramtron International Corp., of Colorado Springs, Colo., which allows overlap of a read at the trailing end of a write operation to obtain its speed.

A shorter fragment length was chosen with more complete overlap of the read pairs.

Other user-provided parameters that limit the supersplat alignment algorithm are the minimum and maximum allowable intron sizes and the minimum overlap of a read on a flanking exon.