Sentence examples for overlap normalized from inspiring English sources

Semantic Similarity: Semantic Similarity was assessed using Gene Ontology term overlap (in Data S1) and by the Dice-Jaccard index (Gene Ontology overlap normalized by the number of terms attached to gene A plus the number of terms in gene B).

The three modules identified using this alternative method have a substantial overlap

This was calculated by comparing the more transmissible and less transmissible of each of the subtypes, taking the minimum SAR estimate for the more transmissible subtype and the maximum SAR estimate for the less transmissible subtype, and counting the number of estimates for both subtypes that fell within this range of overlap (normalized by the total number of estimates for both subtypes).

The number of identical amino acid residues within regions of sequence overlap was normalized over the length of the shorter sequence to determine the sequence identity between the aligned sequences.

Both overlap coefficients normalize the degree of intersection from 0 (no overlap) to 1 (perfect overlap).

Power spectral density was calculated using the short-time Fourier transform with a Hamming window of 1 s, without overlap, and was normalized by the total power of the signal up to 300 Hz.

Alternatively, this can be considered as a tetranucleotide frequency approximation with overlapping trinucleotide frequencies normalized with dinucleotide frequencies.

In all cases, frequencies were calculated from both DNA strands (coding and non-coding) in overlapping windows and normalized for the sequence length.

Since the models may be of different, even non overlapping, lengths we normalized the RMSD on the number of the aligned residues according to simple scaling proposed by Carugo and Pongor [ 32]: R M S D 100 = R M S D 1 + 1 2 log (N 100 ) where RMSD100 is the estimated RMSD when 100 residues are aligned and N is the number of aligned residues.

As neighborhood overlap is a normalized metric and absolute frequency of interaction is not, we have to normalize the latter before combining with a modification in the neighborhood overlap.

For each category of gene elements such simulations were repeated 10,000 times and the observed values of exon (intron) overlapping with CGIs were normalized for the average simulated values.