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A Fisher's exact test was used to determine if the modules from the 5 datasets had a significant number of overlapping genes and these results were depicted as an overlap Heatmap.
Overlap heatmap.
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The heatmap displays the overlap of the resulting three consensus clusters at various tumor cutoffs.
Figure 5 shows a heatmap of the overlap percentages within each species across the tissues as well as between species across the tissues.
(B ) Heatmap showing the overlap between histone acetylation peaks detected at cycle 8 and 12, a.nd ZLD peaks detected at cycle 8 (top 2000 ranked peaks).
Above, Jaccard index heatmaps compare the overlap in predicted edges for all pairwise method comparisons (see "Methods").
The last row and column of each of the heatmaps show the overlap percentages for the dendritic transcriptome compared with the other tissues.
Figure 1 presents, for each of the three contrasts, a pair of heatmaps showing the overlap between each pair of BPNs on the basis of their common perturbed and unperturbed explained interactions.
Among these genes, PCA and heatmap analysis showed modest overlap in transcriptional profiles for CEE and CEE + MPA and a profile for Hi Tib most similar to the control group.
Current approaches are essentially based on either the integration into a general-purpose browser to provide context, but no measure of overlap, or the creation of a heatmap where the copy number itself is used as a metric across all types of events to characterize the recurrence (Cancer Genome WorkBench, https://cgwb.nci.nih.gov/cgi-bin/heatmap; Mermel et al., 2011).
Out of 14,033 InDels used for creating the heatmap, about 94 % overlapped with one or more QTLs specified in chicken QTLdb (http://www.animalgenome.org/cgi-bin/QTLdb/GG/index).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com