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Exact(15)
Together with initialization and for-loop iterations, overall running time becomes (Oleft (V^{2}+frac {E^{2}}{V}+left (frac {E^{2}}{V}+Eright) text {lg} Vright) = Oleft (V^{2}+left (frac {E^{2}}{V}right text {lg} Vright)), which is between O(V 2) and O V 3lgV).
Because the Bader et al. algorithm to decide whether or not a reversal is sorting also runs in O(n) time, the overall running time for one sampling is O(n).
Considering that studying each of the m values is completely independent from the rest, we dispatched each individual analysis run among the available cores of the cluster, reducing the overall running time to the largest m value analysis as if performed alone.
In particular, while the CPU performance increases linearly with the number of simulations, the running times are strongly reduced on the GPU; in this case, the overall running time roughly corresponds to the time required for the execution of the slowest simulations.
For all datasets we investigated, the differences between the two runs of local search were less than 15% of the overall running time.
As discussed in the results section, computing the bootstrap support for all genes takes negligible time, and the overall running time of IsoDE is dominated by the time to complete the 2 M IsoEM runs on bootstrap samples.
Similar(45)
The Knotfind algorithm is even faster, adding only 90 seconds to the same 45 minutes overall run time.
Thus, the overall run time is equal to the run time of the slowest node.
Due to the low connectivity, the overall run time is low and its variability high.
This improvement lightens the load on the master node and enhances the overall run time of iiHadoop 2.7.3.
In rare cases, the Ullmann algorithm is up to 1000 times slower than the VF2. Figure 7 Overall run time histogram.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com