Sentence examples for over multiple sequences from inspiring English sources

Comparative genomics analyses, such as genome annotation, phylogenetic inference, protein structure prediction and protein function prediction, rely heavily on multiple sequence alignment (MSA), which is essentially a homology prediction problem at the character level over multiple sequences.

Furthermore, estimates of α from real data in many species over multiple sequences show increases from 0.26 to 3.0, and this relatively wide window allows us to explore the spectrum of different substitution rates over different sites [ 4] Divergence time (t) is another parameter important for the estimation of Ka and Ks.

The eight lanes of sequences were generated over multiple sequencing runs that were run to variable read lengths.

This approach favoring searches for sparse and/or long regions, is sensitive to over-representation in multiple sequences, but is insensitive to positional context information within the same sequence.

That is why MAFFT 7.0 is advantageous here over other multiple sequence alignment tools.

In addition, multiple sequences can be handled simultaneously via parallelization over numerous processing cores with a message passing interface (MPI -based job scheduling tool.

(3) Combined information from both multiple sequences and multiple structures.

Distinction was also made between individuals producing a single Illumina MiSeq sequence and individuals producing multiple sequences.

Multiple sequences were aligned using Clustal X [45].

In order to investigate the effects on an exemplary practical application, we tested the performance of GERP on simulated multiple sequence alignments over a realistic species tree (Materials and Methods).

HGT with HR affecting only regions within a coding sequence included in the present analysis is likely to go undetected: differing phylogenetic signals over different regions of a multiple sequence alignment will lead to differing topologies among those inferred from bootstrap replicate sequence alignments.