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A unique exception, HPV71 E6 ORF that degraded p53 was outside this clade and is one of the most prevalent HPV types infecting the cervix in a population-based study of 10,000 women.
Using U.S. forest inventory data, we derived successional indices related to shade tolerance and stand age for N-fixing trees, non-fixing trees in the 'potentially N-fixing clade' (smallest angiosperm clade that includes all N fixers), and non-fixing trees outside this clade.
In phylogenetic trees that include paralog pairs from A. oryzae, we frequently find that one of the genes in a pair from A. oryzae has the expected orthologous relationship with A. nidulans, A. fumigatus and other species in the subphylum Eurotiomycetes, whereas the other A. oryzae gene falls outside this clade but still within the Ascomycota.
Three clades of HRSV with sufficient sequences available were identified (labelled 1 3; Fig. 1A), of which two were subtype A, and one was subtype B. HRSV subtype B sequences largely grouped into the one clade, and all but three subtype B sequences falling outside this clade were collected before 2002.
If N fixation has indeed evolved many times in the potentially N-fixing clade, and not once outside this clade (ignoring loose associations that are not true symbioses, such as Gunnera/Nostoc; Gunnera is in the Eurosid I but not in the subclade), it is likely that plants in the potentially N-fixing clade are genetically predisposed to evolve N-fixing symbioses.
Pteriomorpha and Protobranchia are outside this clade.
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Immediately outside of this clade is the Cas9 from other Betaproteobacteria and from gamma proteobacterium HdN1.
Because the three species of Greater Antilles cichlids fell outside of this clade it suggests they did not colonize this region by first occupying Central America.
Other sarcoplasmic calcium binding proteins from a variety of taxa, as well as calmodulin proteins from various taxa (including metazoan outgroup taxa Capsaspora, Monosiga, and Salpingoeca, and non-bilaterian metazoan taxa Amphimedon, Mnemiopsis, Nematostella, Hydra, Renilla, and Trichoplax), form their own groups outside of this clade.
We obtained the unorthodox placement of this clade outside crown group Testudines, which may hint at a surprisingly extensive evolutionary history of the turtle stem lineage.
Monocot sequences, such as C1 and P, as well as the gymnosperm Picea mariana MBF1, cluster outside this group, suggesting that this clade is dicot-specific.
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