Exact(7)
In this work we studied the possibility of cross extinction of rice genes sharing sequence homology outside the sequence of OsSLR1 GST.
Second, most mutations of interest occur outside the sequence cleaved by a single restriction enzyme.
Gene-conversion events that initiate outside the sequence on the left and terminate within the sequence must also be included in our analysis.
We assume that each base can be paired with at most one base regardless of whether the base pair is formed inside or outside the sequence, and internal pseudoknots and crossing interactions (external pseudoknots) are disallowed.
A customized Perl script (https://dendrome.ucdavis.edu/TGPlone/research-projects/ace-sap/) was used subsequently to identify sequencing primers in each alignment and to mask bases outside the sequence interval defined by these primers whose signal would be due to mispriming.
Constraints (6) and (7) mean that each base can be paired with at most one base regardless of whether the base pair is formed inside or outside the sequence (Fig. 4a).
Similar(53)
Two SNPs (rs3025020 and rs833070) outside the sequencing regions but available from previous studies were included in the analysis.
Many environmental sequences resemble other environmental sequences, and have no hits in homology searches outside the sequences from their own metagenome [ 4, 5].
In all cases, binding sites found outside of the sequence region studied (i.e., 2 kb upstream, 5' UTR, introns, and 3' UTR) were excluded.
In case of identical amino acid fragments, the different proteins can be distinguished by differences in sequences outside the depicted sequence.
(In all pictures: the mature sequences in the stem-loop structure are in uppercase except SNPs in mature sequence are in lower case; sequences outside the mature sequences are in lower case except SNPs outside the mature sequences are in uppercase).
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