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Gada also outputs search results in RSS and OPML, allowing users to easily subscribe to and organize searches.
The microPIR2 database outputs search results by displaying a list of matched target genes and/or miRNAs with detailed information on the corresponding target sites.
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To expedite computational processing time, each species' database file was partitioned into 94 fragments (where nfrags = 94), and the parameter setting "–output-search-stats–use-parallel-write use-virtual-frags removedb" was use-parallel-write use-virtual-frags removedb
Also based on sequence similarity, each predicted protein kinase was manually annotated by integrating data from InterProScan [ 101] and reverse PSI-BLAST (rpsblast) [ 102] output searches into Artemis [ 103].
The KAERI-SDB provides a useful output and search result as a scatter plot chart or an index chart.
The output of search database is kind of confusing.
As outputs, dissectHMMER searches for a set of statistically confident domain hits with similar fold for a given query sequence.
Figure 1 is an example of output of search for uniquely shared Pfam annotations for CGA009 and BisB5.
The output of search is presented as a list of molecules fulfilling the substructure similarity criteria as specified by the user.
We examined the unclustered Trinity assembly output to search for the presence of alternative isoforms of these nine DE PERNI transcripts and we found assembled alternative isoforms only for the M9 and M17 transcripts (data not shown).
Interstitial and true telomeric sequences were isolated from the filtered TRF output by searching for (TTTAGGG) n motifs (n > 3 and length > 1 kbp).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com