A statistics on the non-redundant database of outer membrane proteins presently available, indicates that the length of the strands of the training set ranges from 3 to 22 residues (with an average length of 12 residues).
Fig. 1 The image contains multiple tracks from YDHS database: starting from the outer rim with Gene Ontology (GO), Gene, SNP and finally the innermost track is OrphaNet.
In order to provide a convenient and straightforward interface to the prediction and cluster analysis performed in this study, we have set up the online database pCOMP (predicted Chlamydial Outer Membrane Proteins).
So here, as a bit of context, are the shortest-priced favourites to be beaten in the 2,000 Guineas since 1988, the outer reaches of the Racing Post's online form database.
SNP files were loaded into a generic Postgres database to perform a simple full outer join search.
The collection of predicted chlamydial outer membrane proteins is available at the online database pCOMP http://www.microbial-ecology.net/pcomp and might provide future guidance in the quest for anti-chlamydial vaccines.
We identified the putative outer membrane proteins using BLASTp against the OMP database [ 87] and a set of known and categorised OMPs from H. pylori [ 42] using a BLASTp score ratio cut-off of 0.4 [ 88].
We systematically search the literatures of electronic databases including PubMed, Web of Science, Chinese National Knowledge Infrastructure (CNKI) and Wanfang database using the search terms of "OipA", "outer inflammatory protein A" and "HP0638" in English databases and their corresponding Chinese terms in Chinese databases.
In the BiGG database, every reaction (except for exchanges and transports through outer membrane) is annotated with a confidence score assessing its level of experimental evidence.
The sequence of these genes were identified by BLAST searches (Table 1) in a flax EST database obtained from a cDNA library derived from the outer fiber-bearing tissues of flax [ 24].
