Sentence examples for our full alignment from inspiring English sources

Our full alignment, exon nucleotides and ycf1/ ycf2 partitions were analyzed under the same parsimony criteria for comparison, as were the alignments of [ 20- 22].

Our full alignment contained 42468 alignment patterns, and resulted in highly supported and almost completely congruent topologies in ML, Bayesian and parsimony analyses (Additional File 4).

In fact, the resolution provided by loci used in previous Pinus studies is indistinguishable from or slightly greater than that of comparably sized random genomic subsamples from our full alignment.

In parsimony analyses of variable-sized jackknife samples of our full alignment, nodal support showed a strong positive correlation with the length of the nucleotide matrix (proportion nodes ≥ 95% = -1.0808 + 0.38497*log10 [matrix size, bp]; r2 = 0.915, P < 0.0001).

The empirical results of these studies fell within or close to the 95% prediction intervals established from our jackknife resampling response from our full genome alignment, indicating that the loci used in prior studies (primarily rbcL and matK) are similarly informative as a comparable sample of random nucleotides from the chloroplast genome.

The procedure corrects for single insertion and deletion errors to produce the best scoring full alignment based on our scoring criteria for the region of overlap.

Those states choosing "full alignment" agreed that the "aligned" CCSS part would represent "at least 85percentt of the state's standards in English language arts and mathematics".

RNI was first aligned to Homo_7 using these methods, and adjusted manually, and then aligned to the full alignment of all human PRAMEs guided by the Homo_7 alignment.

ClustalW [ 31, 32] was then used to profile-align these sub-alignments, producing the final, full alignment.

The remaining polyserine segment was separately aligned using t-coffee and re-inserted into the full alignment.

For each database search, sequences that score more than the family-specific threshold are aligned to the HMM profile automatically to make a full alignment.