Exact(2)
Atomic models of RuBisCO complexes with different relative orientations were generated with Visual Molecular Dynamics (VMD) (Humphrey et al., 1996).
A total of 500 models with identical backbone conformations and different side chain orientations were generated using MODELER v9.8 based on the active β2AR structure (alignment shown in Supplementary Figure S4).
Similar(58)
For water, 60 orientations are generated, with its hydrogen atoms equally distributed in space.
First, projections of the initial model from various orientations are generated.
2. Placement during which a collection of orientation is generated from the pool of ligand conformations.
To verify the validity of the proposed modeling approach, PMFSFs with different porosity and fiber orientation are generated, and then the effects of the fractal surface topography and the fractal parameters such as fractal dimension and height scaling parameter on the gas permeability of PMFSF were investigated.
All DTAG sensors were calibrated using laboratory-derived constants adjusted to the specific conditions of each tag recording to minimize temperature- and pressure-related sensor offsets, the resulting data were decimated to 5 Hz and a pitch, roll and heading file describing each animal's orientation was generated [see [ 16]].
For luciferase reporters, a 1.2-kb fragment of the HuR mRNA starting at position +1 of the 3′UTR comprising the HuR siRNA binding site (position 1186 in GenBank accession number NM001419) in either sense or antisense orientation was generated by gene synthesis and cloned into the XhoI and NotI sites of psiCHECK-2 plasmids (Promega).
In Figure 4, two magnitudes weighted orientation histograms were generated for Brain T2 MR. The magnitudes weighted orientation histogram by Gaussian derivatives distributed more uniformly.
As a consequence, Bain, Pitsch and many intermediate orientation relationships were generated.
A total of 48 simulated electron micrographs each containing 150 particle images at random orientations and locations were generated.
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