Sentence examples for orientation strand from inspiring English sources
The transcript annotation including transcription orientation, strand, starting site (hg19) was downloaded from hg19 RefGene table from UCSC Genome Browser (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/).ucsc.edu/goldenPath/hg19/database/
For each of these transcripts, we used chromosomic coordinates of transcription start sites (TSS) and transcription end sites (TES), and orientation (strand).
Orientation or strand bias is a unique criterion, in that it is independent of the integration biases of MuLV that may be influenced by cell type or genotype.
Target sequence identification for the two POU domains relative to each other and to the Sox2 site were not restricted in order, orientation, or strand.
Alu elements in the reverse orientation (minus strand) were reverse complimented to be viewed in BioEdit in the forward orientation.
However, T-box and Smad binding elements do not form part of the same motif, and although they appear in close proximity to each other they have inconsistent spacing, orientation and strand orientation relative to each other.
In this case, reverse complementing the second read of the pair will reverse its orientation and strand to be consistent with that of the first read in the pair.
Typically in a whole-genome shotgun (WGS) sequencing project, the sequence information consists of randomly sheared fragments whose order and orientation (which strand of DNA they come from) within the genome is not known.
Following to visualize the correct orientation of strands, one would press the "SHIFT" key to flip the structure along the X axis during importation.
In the other orientation, β-strands 1 3 and helix 2 on the opposite face of the catalytic domain contribute to membrane binding.
This review mainly focuses on non-canonical structures adopted by DNA oligonucleotides which have certain prerequisites for their formation in terms of sequence, its length, number and orientation of strands along with varied solution conditions.
