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One possible mechanism that reduces genome size is unequal intrastrand recombination between the two tandem repeats in direct orientation on the same chromatid.
We next examined for PBHs (those in the correct orientation on the same chicken chromosome, regardless of the distance between them on the chicken genome).
These two genes are located side by side in an inverted repeat orientation on the same chromosome and share a promoter.
The genes that encode sPLA2-IIA and sPLA2-V molecules are linked in a negative orientation on the same chromosome [ 14].
Gene overlaps are defined as two genes identified by different pipelines, which have the same stop signals and strand orientation on the same contig sequence.
Eight of the members of this unique potassium channel family are present in reverse tandem orientation on the same individual chromosome (four pairs).
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Then, the nanocutting simulations are performed along different crystal orientations on the same crystal surface.
Then, the nanocutting was performed along different crystal orientations on the same crystal surface.
We can see that with the same cutting depth of 3 nm, the thickness of deformed layer on machined surface are quite different when cutting along different crystal orientations on the same crystal plane.
Another intriguing observation is that the short palindromic repeats in the V. carteri organelle and nuclear genomes are found in both orientations on the same strand, i.e., the same sequence can occur in the 3' to 5' and 5' to 3' directions – this is suggestive of a transposition-mediated mechanism of mobility rather than one based on recombination.
For example, yeast homeodomain TF MATALPHA2 binds to DNA as a homodimer in several different relative orientations, including on the same or on different strands [ 46].
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