Sentence examples for orientation of reads from inspiring English sources

The orientation of reads was calculated from the SAM bit flag data.

The parameters collected of the 378 genes included orientation, length and exon-number, distance to neighboring genes and their orientation as well as the number and orientation of reads.

Reads were subsequently divided into different classes based on mapping position and orientation of read ends.

Low-coverage regions or mis-orientation of read pairs suggests mis-assemblies, while aberrant insert sizes indicate small insertions or deletions.

The output of "Bowtie" includes the names of the reads that aligned, the orientation of the reads in the alignments, the names of the sequence to which the reads aligned, and the offsets into the reference sequences of the alignments.

For example, when dealing with single-end reads that do not originate from a known strand of DNA or RNA, a given read r and its reverse complement rc (r ) are often equivalent for the purpose of most analyses the same is also true of non-strand-specific paired-end reads, though the relative orientation of these reads should be preserved (Section 2.2).

After adapter trimming and adjustment of the orientation of all reads to correspond to that of the original RNA sequence, reads were collapsed into unique reads prior to further analysis.

These would be read-pairs that deviate from the expected mate-pair orientation of both reads occurring in the same direction or read-pairs that are outside the expected 1.5 kb insert size.

The workflow is structured as a sequence of Perl modules that enable automated (1) community modeling, (2) simulations of metagenomic sequencing, (3) orientation or translation of reads, and (4) alignment.

Because the distance between the paired reads is known, an assembler can use both the expected distance and the orientation of the reads to reconstruct the correct sequence.

Together, the read tail encoding, the bit tree, and the counts represent the information needed to reconstruct the original reads if we do not care about recording the locations of 'N' characters or the orientation of the reads.