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However, the nature and orientation of expression control elements revealed to be critical.
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Right orientation of the expression cassette containing the cDNA and correct sequence of the clones were then confirmed by i) digestion of the plasmids extracted from bacterial cultures, ii) PCR amplification using a combination of the "pNZ8148 fwd" forward primer and of a reverse primer specific for each cDNA (Table 3B), and iii) sequencing analysis.
The recombinant plasmid was sequenced using Applied Biosystems BigDye® Terminator v3.1 kit to confirm the orientation of the expression cassette.
The orientation of the expression cassettes within the T-DNA in the binary vectors, pMOA33-Lhca3-antiGSL1 and pMOA33-Lhca3-antiGSL2 pMOA33-Lhca3-antiGSL2 pMOA33-Lhca3-antiGSL2and ScaI for pMOA33-Lhca3-antiGSL1; EcoRV and XhoI for pMOA33-Lhca3-antiGSL2) to select a binary vector that contains the Lhca3 promoter adjacent to the right border washin testedDNA.
The ompB promoters in Rmona601 and Rmontanensis700 drove expression of aberrant DsRed2, GFPuv and CAT mRNAs regardless of the orientations of the expression cassettes or the presence of independent or single shared transcription terminators.
The FRET signal is affected by numerous variables, e.g. the chosen fluorophores, sterical orientation of the fluorophores, expression and size of the fusion protein, quantity of interacting proteins and, finally, distance between both interaction partners [3], [4].
The orientation of these complementary expression domains in each mesentery is summarised in Figure 5A C and reveals that the bilateral symmetry of the red fluorescent pattern is also maintained at the tissue level.
Transfer vectors pΔudgdloxPH5GZ-A and pΔudgdloxPH5GZ-B, which differ only in the orientation of the gfpzeo expression cassette, were subsequently used to generate MVAΔudg recombinants vDG013 and vDG014, respectively, as described below.
To determine the specificity and spatial orientation of transgenic DKK1 expression within the thymus, in situ hybridization with a DKK1 specific probe was performed on thymic sections derived from either control ST or TetO-Dkk1 mice following 5 days of Dox induction.
Some states represent descriptors of specific cell behaviours (i.e., orientation of intercalation) or expression of a particular gene (e.g., Nodal).
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