Sentence examples for orient sequence from inspiring English sources

The map was used as a reference linkage map to anchor and orient sequence scaffolds for B. rapa genome assembly.

LINKS is a scalable, alignment-free scaffolder, which extracts spaced k-mers from reads as its pairing information source to order and orient sequence contigs into scaffolds.

An RNA sequence is a linear, oriented sequence of the nucleotides (bases) A,U,G,C.

In several cases, the total number of uncaptured gaps was reduced to <2, thereby eliminating the challenge of ordering and orienting sequence contigs.

Biases could have been generated by 1) preferred insertion of ISs in nonrandomly oriented sequences in the chromosome, 2) postinsertion selection favoring specific orientation, or 3) by transpososome interaction with an asymmetrical structure within the replication fork.

We refer to those regions as identically oriented sequences (5' and 3' IOS, Fig. 1B).

Some of incorrectly oriented sequences can be detected by looking for alignments in the original direction having multiple non-consensus splices, that become all-consensus, high-identity alignments when reversed and complemented.

We use the map information to order and orient the sequence scaffolds ( = arranged contiguous DNA sequences with interior gaps of known size) of the N. vitripennis assembly 1.0 and to estimate recombination rates along all five chromosomes of Nasonia.

The first nucleotide of GmPRP2 cDNA was designated as +1 to orient the sequence numbers.

The resulting fosmid clones often capture the DNA residing in previously uncaptured gaps, thereby helping to order and orient the sequence contigs.

However, it became clear that even with this reduced coverage strategy, Celera could generate an accurately ordered and oriented scaffold sequence of the human genome in less than 1 year.