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Finally, bacterial, fungal, viral and protozoan reads were removed by aligning each Illumina library to all sequenced genomes of these organisms (source: NCBI Reference Sequence, RefSeq, March 2012) using Bowtie v2.0.0-beta5 v2.0.0-beta5
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As a consequence of this confidence, the model organism ("source") can represent these other unstudied species ("targets").
Like proteases, optimum conditions for carbohydrases vary widely depending on type and organism source and selected conditions greatly influence enzyme activity.
Another study found no association between final visual acuity (log MAR values) and diabetes, causative organism, source of infection, and performance of vitrectomy [15].
The choice of the NO detection method to be used depends on the characteristics of the experimental system and the levels of NO production which depend on either the organism source of samples or the experimental conditions.
The classification of allergy references also required development of a similar approach, because a classification based on the organism source of the allergen would not conform to the established classification in use in the allergy community.
WolfPSort was run with "fungi" as the organism source.
In contrast, organism source is generally considered prior knowledge in genomic sequencing.
This paper determines the amount of gene regulatory information that can be mapped from a model organism (source genome) to a non-model organism (target genome), based only on gene and promotor sequences and transcription factor binding site motifs.
Subsequently, for non-obsolete or deleted UniProt entries, the protein domain architecture, organism source of sequence, protein sequence length and protein molecular weight were extracted from XML-formatted UniProt entries (UniProt release 2010_10 Oct 5, 2010).
First, the relatively small sample size did not allow in-depth analysis of the relationships between presepsin levels and disease characteristics (for example, infecting organism, source of sepsis) or severity (for example, physiological score, multiorgan failure) as well as the therapy applied.
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