Sentence examples for organisms in the sample from inspiring English sources

The base compositions of strategically selected regions of the genome are used to identify and distinguish organisms in the sample.

Unlike other previous methods, whole-genome studies require unbiased high-throughput sequencing technology and heavy computing, which in turn can provide comprehensive insights in the biodiversity and functional breadth of the organisms in the sample.

The frequency of occurance of a COG i, F i), calculated as Where no is the number of organisms in which the COG is present and nt is the number of organisms in the sample dataset (42).

We have previously shown the assay used here provides reproducible quantitative results, and that a similar real-time quantitative PCR assay correlates well with the number of whole organisms in the sample (14, 34 ).

The phylogenetic relationship of clone number 107 was resolved using ARB, which supported its relatedness to Corynebacterium sp. The coverage ratio for the 3 clone libraries was high for the clone library of the internal site (96.8%) and for external site (90.2%), indicating that most of the organisms in the sample had been detected.

The LAMP assays may have had false-negative results because the number of organisms in the sample was below the lower limit of detection for the assay, or because of failure of primer annealing, although we consider this unlikely for rrs, given the conserved nature of the target.

Given the paucity of information about the causes of infectious bovine abortion and the high prevalence of Chlamydia-like organisms in the samples from Switzerland, we attempted to determine whether such organisms can be detected in bovine fetal tissues in the United Kingdom.

When more appropriate culture conditions were applied, after initial 16S rRNA sequencing identified the organism in the sample, we obtained florid culture growth, sufficient numbers of bacteria for optimal biochemical testing, and sufficient quantities of DNA for successful MLST analysis of the C.jejuni isolate.

Here, we propose an alignment-free, n-gram based tool, MetaID that can identify the metagenomic taxa at the strain level and also quantify the relative composition of each organism in the sample.

However, we here refrained from further analysis of the abundance-matrix, because due to different genome sizes and rRNA gene copy numbers among protists [ 75] and PCR primer selectivity [ 30] the abundance of PCR-amplicons from a sample does not necessarily reflect the relative abundance of the respective organisms in this sample.

In metagenomic analysis, short-read redundancy can obscure the identities of the organisms present in the sample.