Sentence examples for organisms in the reference from inspiring English sources

The organisms in black do not form a clade with other organisms in the reference tree.

As none of the species used to build the pseudometagenome had conspecific organisms in the reference database, correct assignments could only be made at the genus level or higher.

In order to better to describe these genes and their evolutionary history, their locations and characteristics were mapped and their sequences were compared to proteins from the 10,291 organisms in the Reference Sequence database from the National Center for Biotechnology Information [ 9].

N is the number of organisms in the reference set, I is the sum of PXj over all reference genomes j, J is the sum of PYj over j, and K is the sum over the subset of genomes that contain homologs of both X and Y. Networks were created and presented as graphs in which each protein was represented as a node and an interaction between proteins was represented by an edge.

Since B. fulgida had not yet been sequenced, its reads could be assigned by BLASTX only to proteins of other organisms present in the reference database.

The sampling conditions and RNA-Seq library preparation protocols are detailed for each organism in the references provided in Table  1.

Typically, we refer to the fused gene as a 'composite' protein, while the un-fused counterpart genes in the reference organism are referred to as 'component' proteins [ 1, 3].

Moreover, it was observed that the taxonomic level to which individual test sequences (originating from genomes of test organisms) were not represented in the reference database also varied.

The scoring method uses a random model to limit genome representation bias in the database and avoid assigning taxonomic labels by random chance when a novel organism is not represented in the reference database.

In XuniqMAP, the display is also split into two levels, namely reference and target, corresponding to all the unique regions of the gene in the reference organism and those matched by the target organism, respectively.

(3) In our approach, we assume that a conserved transcription factor in the target organism interacts with a binding site that is very similar to that in the reference organism.