Sentence examples for organism pathways from inspiring English sources

The cell is the best starting point for development of new therapeutics and new cellular molecular biology techniques, because the whole cell as a biological entity has always been the first target en route to mechanistic understanding of both intracellular and whole organism pathways and processes.

By considering which reactions happen more frequently in an organism, pathways can be optimized to include the most common reactions to maximize the production of the target compound and exclude reactions that may only occur at very low rates in the organism.

Approximately 39% of the unigenes were assigned to KEGG pathways using the KEGG Automatic Annotation Server (KAAS) with all organism pathway databases included.

Although a ROS pathway in E. coli was shown in this study, the BN+1 algorithm can readily be applied to other organisms, pathways, and data types.

> -wrap-foot> Given the structure presented in Figure 1, it can be observed that there are five important merge points for these data, i.e. relationships between proteins and organisms, pathways and organisms, proteins and enzymes.

However, the complexity of higher organisms cannot be explained solely as a collection of separate parts [ 4]; in organisms, pathways never exist in isolation, they are part of larger networks, which are more informative and real [ 5].

A network is created for every KEGG pathway associated with the model reactions, so some reactions may be displayed in multiple networks; for example, the pyruvate kinase reaction is present in both the Glycolysis/Gluconeogenesis and the Carbon Fixation in photosynthetic organisms pathways, so models containing this reaction will result in the creation of separate networks for both pathways.

The IntegromeDB web site supports RDF format by providing export of the Search Results web page in RDF format (at the top of the page; Figure 2) and also providing download of some parts of the database that describe organisms, pathways, synonyms, and interactions as the RDF formatted files http://integromedb.org/download_rdf.jsp.jsp

KEGG pathway analysis of the carbon fixation in photosynthetic organisms pathway of M-81E (A) and Roma (B).

The provided gene set will then be compared to the local database generated from the selected organism-pathway protein sequence combination using the BlastP algorithm.

There were 6 and 8 DEGs of M-81E and Roma, respectively, mapped to the carbon fixation in photosynthetic organisms pathway.