Whole-cell model development requires comprehensive model organism databases.
Keseler, I. M. et al. Ecocyc: fusing model organism databases with systems biology.
Model organism databases (MODs) and other resources are rich with functional information but difficult to mine.
WholeCellKB (http://wholecellkb.stanford.edu) is an open-source web-based software program for constructing model organism databases.
MARRVEL is a publicly available website that integrates information from six human genetic databases and seven model organism databases.
The Model Organism Databases (MODs) provide in-depth biological data for intensively studied model organisms.
NIH genome institute wants to scale back support of human and model organism databases.
Soon after, several model organism databases that store and display the annotated genome sequences of well-studied organisms were developed.
The initial requirements for Phenex grew out of early experiences using Phenote, the mutant phenotype curation tool in use by several model organism databases [4].
Details of the genome annotations of A. thaliana, C. elegans, and D. melanogaster were extracted from their respective model organism databases TAIR, WormBase and FlyBase [44] [46].
Table S1 Data statistics for 13 model organism databases.
