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O rgan development transcripts (which included post-embryonic organ, shoot and root development, and leaf senescence) were also present in clusters 1 and 3, but also cluster 6.
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In Arabidopsis, MTA is mainly expressed in dividing tissues, particularly in reproductive organs, shoot meristems and emerging lateral roots.
Similarly, the homolog of METTL3 in A. thaliana, MT-A, is mainly expressed in dividing tissues, particularly in reproductive organs, shoot meristems and emerging lateral roots [7].
Apical dominance is a complex physiological process largely controlled by auxin and its interaction with two additional hormones: cytokinins and MAX (more axillary branching [ 43- 45]. Cytokinins produced in the roots are directed to organs (shoot apical meristems, fruits, etc) whose sink strength is related to their ability in producing and exporting auxin [ 46].
This class also contained a second MtHAP5 gene (MT000406), expressed in many other organs (shoots, flowers, seeds).
L2 was found to be the best reference gene for the experimental conditions (Ct, MWD, SWD and Rec) and plant organs (shoots and roots) used in this work.
Reference genes were selected based on a previous study where the accumulation of HDA3, L2, APRT, ELF-1α, ACT7 and ACT11 (Additional file 3) was quantified on cDNAs from the plants with different water status and plant organs (shoots and roots) using the geNorm [ 50] and NormFinder [ 51] in Genex software (version 4.3.8) (MultiD, Göteborg, Sweden).
The diversity measures of the three organ classes (shoot, inflorescences and traps) group in a region of relatively low diversity.
For example, anatomical structure development (which included organ and shoot morphogenesis, and photomorphogenesis) and multicellular organismal development (includes embryo development) were both associated with early embryogenesis (cluster 4).
According to microarray data, OsZIFL5 and OsZIFL10 are highly expressed in seed tissues, while OsZIFL7 and OsZIFL12 are expressed in reproductive organs and shoot tissues.
Apart from this they developed normally, until after the transition to flowering and bolting, at which point inflorescence meristems ceased producing new organs and shoot elongation stopped.
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