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Alternatively, more efficient ordering algorithms (such as the one described in [22]) can be used.
Marker order was determined with the AutoMap function and different combinations of the Branch and Bound II and Seriation II ordering algorithms with Sum of Adjacent Recombination Fractions and Count criteria for ordering and rippling.
The first step performed by most temporal ordering algorithms is a dimension reduction such as PCA.
AVAILABILITY: Academic implementations of the ordering algorithms are available as source code (in the programming language Python) on our web site, along with documentation on their use.
CarthaGene looks for multiple populations' maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms.
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In this paper, we therefore introduce a new node ordering algorithm based on a novel scoring function.
An important feature of the optimization procedure is the ability to generate a number of competing ordering algorithm designs.
The adaptive reference frame ordering algorithm, reported previously [24], is integrated with the proposed prediction architecture.
By marking and unmarking stories as "highlighted" using the blue corners in the interface, you can teach Facebook's EdgeRank news feed ordering algorithm your preferences.
To assess the feasibility of our methodology for large-scale sequencing and assembly, we first tested our clone ordering algorithm, which is crucial to the scalability of our assembler.
For our purposes, since our clone ordering algorithm is fairly tolerant to errors, we do not need our library to be controlled for quality to the degree that traditional sequencing projects require.
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