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The order of site visits was based on a replicated Latin square (Fleiss 1986) [see Supplemental Material, Table 1 (http://dx.doi.org/10.1289/ehp.1104413)].
To determine which sites were regarded most important by the ResNet algorithm, we plotted the order of site selection of the map of Ecuador (Fig. S4), which suggested that sites in the Andes were selected first.
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In this paper, KaiC variants are sequentially shown as a superscript format in order of sites 426, 431, and 432 where the wild-type residue is in upper case and mutated residues are shown in lower case, i.e. KaiCxyz, where x = residue at position 426, y = residue at position 431, and z = residue at position 432.
The observed value was then compared to a distribution obtained by randomising the order of sites within drainages and recomputing the measure of association as described above.
As a final validation, we turned to a permutation-based approach whereby the order of sites in each alignment was shuffled.
Although the rank order of sites derived from the plasmid standards was reproducible and approximated the expected result, separation between groups was greatly decreased as compared to the analysis based on read number, and distinction of groups was impossible due to overlap (Additional file 1: Figure S3B).
Although it's just one of many similar seizures, as orders-hundreds-of-sites-de-indexed-from-google-twitter-bing-facebook.ars"Ars Technica points out.
(The IndieGoGo page and the Order of Yoni site are both written in broken English).
The first line of the file consists of the IDs of human individuals, followed by the SNV ID and the genotypes in each individual, which themselves follow the order of SNV site locations.
The control of "randomize sites," which randomizes the order of polymorphic sites before analysis, detected no gene conversion events in the cluster, so that the results of subsequent GENECONV analyses for FFAR2 are reliable.
The first control analysis of "Randomize sites", which randomizes the order of polymorphic sites before analysis, detected no gene conversion event in horse, rat, mouse and guinea pig datasets, implying the results of subsequent GENECONV analyses are reliable.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

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