The default (third-order) MM was generated for BioProspector using the genomebg program provided with the software.
A sixth-order MM was generated for MEME using a custom Perl script, and for Motif Sampler using the INCLUSive CreateBackgroundModel program (Thijs et al., 2002).
Interestingly, the tool that performed the best (though by a nonsignificant margin), BioProspector, models background sequences using a third-order MM, the same type as that used by Sandve et al. (2007) to generate the AM background sequences.
The correction (in absolute value) achieved by the system in this work was on the order of d = 25 mm, while our AR algorithms introduced an error dra = 2.91 mm.
All reactors were fed with Sistrom's minimal medium [ 41] containing one of the following pairs of carbon and nitrogen sources in the respective order: 33.9 mM succinate and 7.5 mM ammonia, 33.9 mM succinate and 8.1 mM glutamate, 19.8 mM glucose and 8.1 mM glutamate, and 26.6 mM glutamate as both carbon and nitrogen sources.
Reagents were added in the following order: 10 mM dNTPs, 10X High Fidelity PCR Buffer, 50 mM MgSO4, and 5 µM each of forward and reverse primers (Additional file 1: Table S2) and mixed thoroughly before adding 2.5 U Platinum® Taq High Fidelity.
Our data show that BclXL undergoes irreversible aggregation and assembles into highly-ordered rope-like homogeneous fibrils with length in the order of mm and a diameter in the μm-range under elevated temperatures.
The total thickness of the superconducting coils is of the order 0.5 mm.
High-aspect-ratio fibrils are obtained with typical dimensions of order 1 mm by 1 μm.
The Eotvos effect is primarily responsible for bubble dynamics in small diameter tubes, i.e. those on the order of mm for water.
The experimental results show that the vibrator has, practically, a linear characteristic for oscillations of the order ±3 mm in amplitude and has a resonance frequency of approximately 36.5 Hz.
