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Based on the obtained bit error rate, the full achievable diversity order is verified.
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The sequential order was verified by fax sent to a blinded person at the sponsor and from entries in the screening logs.
Phylogenetic trees were generated from homologies of the LKR/SDH amino acid sequences from different sources by the neighbor-joining method, and the confidence of the branching order was verified by making 1,000 bootstrap replicates using the fourth version of MEGA software.
Marker order was verified using the "ripple" function in ONEMAP.
The final order was verified using the "ripple" command with a LOD value of 3.0.
Map order was verified visually by examining the raw genotypes and the linkage map was generated using MapChart [ 55].
For each BUILD at each LOD threshold cut-off, the marker order was verified using the FLIPS function with a moving window of five markers (FLIPS5).
Map order was verified by a blastN search of the primer sequences of a new locus and its neighbour reference markers on the scaffolds of the 8X grape genome assembly.
The recovery of design-order is verified by several linear wave tests.
Local orders were verified with the 'ripple' command (window size of 5 loci, LOD 3).
Map orders were verified by performing independent estimations of likelihood but including markers from adjacent clusters.
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