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In addition, two maize homoeologous regions yielded the same gene content, order and orientation as in sugarcane.
The order and orientation of most BAC clones in each contig were confirmed by BAC-end sequencing.
The var. gattii MATα locus genes showed rearrangements in order and orientation vis-à-vis other two varieties.
The gene order and orientation were similar to those found in other bacteria with some differences.
However, the order and orientation of DNA sequences within BACs is often not known.
Most of the genes (>90%) were found conserved in the same order and orientation between the two orthologous sequence.
OrthoCluster was configured to detect all blocks of minimal size two that are conserved in terms of gene order and orientation.
Mate pair information was used to predict the order and orientation of the contigs, confirming that no genomic rearrangements were present relative to KIM 10+.
Lepidopteran mitochondrial genomes have a relatively conserved gene order and orientation [8], which is shared with that of Drosophila species [9].
This indicated that in these two isolates, EhGI1 through EhGM5 were present and located in the same order and orientation as in the EHOS.
In chicken the order and orientation of the genes remains unchanged and they are integrated with genes which represent the main part of X conserved regions in mammals.
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