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(B ) Top binding motifs discovered de novo with Weeder or Trawler in ELK1, ELK4, and SRF peaks.
De novo motif discovery using Weeder or Trawler (Pavesi and Pesole, 2006; Haudry et al., 2010) revealed that the top 3 over-represented motifs were 5′AAGTG3′, identical to the NKE; 5′GATAA3′, identical to the GATA-binding motif; and 5′TGCCAA3′, similar to the binding motif of Nuclear Factor 1 (NF1).
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It can be either a side or stern trawler with an insulated hold where the fish are stored "wet," or fresh, after sorting.
We actually hoped to see a cargo or fishing trawler occasionally so we could initiate radio contact and confirm our position.
You can remain in the trawler or Zodiac boats for a surface view, or seize the rare (if chilly) opportunity to snorkel among these sleek giants.
Significance can be then assessed for example with a third-order background model (MDScan), or more simply by comparing the match counts in the input to randomly selected background sequence sets, e.g. with z-scores (Trawler) or a hypergeometric test (Amadeus and DREME), or the overall match count across the whole genome.
In the United States and Canada, fishing vessels have grown with the introduction of processing or factory trawlers, while the huge fleets of this type of vessel operated by Soviet-bloc countries and Japan have shrunk.
Where vessels are locally based (e.g. tuna vessels or shrimp trawlers), by-catch is often brought back to port where it is sold, often by women and other disadvantaged groups.
From the sea, Israeli patrol boats fired at a Lebanese trawler or two.
The mast supporting the booms may be located forward, in which case the wheelhouse is located aft as on a side trawler, or they may be amidships with the wheelhouse forward, as on a stern trawler.
It's a typical sight in fishing areas: a trawler or other boat being followed by seabirds eager to gulp down the unwanted fish the crew throws back.
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