Sentence examples for optional alignment from inspiring English sources

PSI-Search includes an optional alignment boundary-masking procedure that reduces HOE errors in the PSSM profile.

Specificity for particular target groups, such as archaea, can be obtained by supplying an optional alignment of sequences from which to exclude matches.

The web interface shows hit sequences with associated scores/E-values and includes an optional hit alignment using MAFFT (Katoh et al., 2005) with subsequent display in Jalview (Waterhouse et al., 2009).

SSAHA2 [ 17] is less limited but is impeded by coupling k-mer searching with non-optional local alignments that are unnecessary for some applications.

GAPipeline (the vendor-supplied analysis tool) performs image analysis, base calling and alignment (optional) and is composed of a number of independent programs.

The study involved Gayonese, Javanese and Acehnese participants with related complexities created through histories of forced and optional migration, political alignments and the relatively recent cessation of a 30-year civil war which was predominantly fought on ethnic grounds (for further details, see Norris 2009).

The input to the program is simple and consists of two FASTA files, e.g. reference sequence and assembled contig, specification of expected SV, e.g. option –inv for alignment with inversions, and optional specification of sequence subranges and scoring parameters.

GenomeKey's workflow consists of seven stages with an optional annotation stage: Re-alignment and mapping (BAM to BWA).

The optional final stage uses read alignments to genomic sequences (read-to-genome alignments) in BAM format to compare the coverage of the predicted chimeric transcripts to their corresponding wild-type transcripts.

Contestants are judged on strength, flexibility, alignment, difficulty of the optional poses and overall execution.

The optional module utilizes a multiple sequence alignment (MSA) comprised of available reference genomes for the target.